مقالات پذیرش شده در اولین همایش بین المللی و دهمین همایش ملی بیوانفورماتیک ایران

• Integrative analysis of DNA methylation and gene expression to identify gastric cancerdiagnostic biomarkers via machine learning approache

• Comparison of Random Forest and Boosted Regression Tree in improving predicted affinity

• Classification of Autistic Patients and Control Via Utilizing Dictionary of Functional Modes as Brain Atlas

• In silico transcriptome analysis of drought and salt involved responsiveness genes in Brassica napus

• ApInAPDB: A database of apoptosis-inducing anticancer peptides

• RNA-sequencing of CD۴+ T cells in Relapsing-Remitting Multiple Sclerosis patients at relapse; deciphering the involvement of novel genes and pathways

• Exploration of Plastic Contaminated Soil Metagenome to Identify Novel Plastic Degradation Enzymes

• Identification of peripheral blood mononuclear cell gene signatures for detection of hepatocellular carcinoma

• Development of a new oligonucleotide block location-based feature extraction (BLBFE) method for the classification of riboswitches

• Investigating the obesity paradox in patients with Hepatocellular carcinomas using bioinformatics approaches

• Transcriptome profiling analysis of Suaeda salsa shoots under salinity stress

• A new reconstruction of mouse metebolic model using orthology- based approach

• EARN as a precision oncology tool leads us to propose the targeted genes panel for metastatic breast cancer

• A Novel Method for Predicting Drug Synergy Based on Matrix Factorization

• Core proteome mining of Salmonella enterica subsp. enterica to explore novel therapeutic targets and design a multi-epitope vaccine

• Indicator Regularized Non-Negative Matrix Factorization Vs. a Novel Combinatorial Heuristic Matrix Factorization: a Comparison of Matrix Factorization Methods as theBuilding Block of Drug Repurposing

• Target prediction for the inhibitors of VEGFR۲ as anti-colorectal cancer compounds using similarity-based search methods

• Inflammatory Target prediction for the FDA-approved anticancer drugs using morgan fingerprint similarity-based methods

• Investigation of common genes in different stages of non-alcoholic fatty liver disease with microarray datasets analysis

• Casilico: A versatile CRISPR package for in silico CRISPR RNA designing

• Molecular dynamics simulations show structural insights into the N-terminal domain mutations of the spike protein in the Omicron (B.۱.۱.۵۲۹) variant of SARS-CoV-۲.

• Inferring microbial communities using constrained damped lasso regression based on the generalized Lotka-Volterra model

• Novel insights in targeted therapy of cancer by mathematical modeling of cancer immunoediting

• Negative Binomial Mixed Models for Identifying Oncogenic dependencies through analysis of RNAi Screening data

• How does a bacteriophage enzybiotic target bacteria? Introducing a structural model of bacteriophage PhaxI lytic enzyme

• A diffusion kernel-based approach for protein domain identification

• Using Liquid Association Analysis to detect controller genes involved in pituitary nonfunctioning adenoma invasiveness

• Non-coding and Transposable elements discovery through artificial intelligence approaches

• Simultaneous inference of cell-line-specific gene regulatory networks and mode-of-action of drugs from drug-induced gene expression measurements

• Machine Learning and Feature Selection to SEER Data to Novel Diagnosis Thyroid Cancer

• The Application of Feature weighting models for Identification of key genes associated with the Transcriptomic Response to Drought Stress in Populus Species

• Performance evaluation of different machine learning classification models on expression profiles of tumor educated platelets data

• Prediction of immunogenic peptides derived from FVIII by machine learning approach

• Mutation prediction of Infectious viruses based on Different Machine learning approaches

• Prediction of protein aggregation tendency based on the support vector machine algorithm

• Predicting the membrane proteins’ classification using multi-dimensional wavelet and random forest classifier

• Functional annotation of Missense Mutations Based on Protein Features

• Identification of molecular features and pharmacophores for selective inhibition of cyclindependent kinases: Application of counterpropagation artificial neural networks

• Prediction of Disease-Causing Genes in Breast Cancer by Graph Mining in Biological Networks

• GA greedy time-frequency analysis of electrodermal activity for cognitive state monitoring

• TM-Bench: A benchmark dataset for thermophilic-mesophilic proteins classification

• The efficiency of artificial neural network (ANN) for diagnosis of obesity and hypertension

• Similarity detection between modern human genome and their ancestors DNA sequences by Deep Learning

• Diagnosis of COVID-۱۹ patients based on chest CT images using image processing algorithms

• Evaluation of COVID-۱۹ mutations and predicting the rate of disease transmission and pathogenicity based on the types of mutations

• Identification of a three-miroRNA-based prognostic gene signature in hepatocellular carcinoma using the random survival forest method

• Machine learning-driven set of peripheral blood microRNAs as diagnostic biomarkers for myocardial infarction

• Machine Vision Based Conic Estimation: An Effective Tool for Reinforcement of Deep Learning in Measuring Fetal Head Circumference

• Identification of genes affecting in Non – small cell lung cancer using machine learning techniques and bioinformatics tools

• Prediction peptide activity and interaction in drug discovery by utilize machine-learning technique

• Toxicoinfotrmatics: Recent Approaches in Integration of Big Data Biomath for the Benefit of healthcare policy

• Evaluation overexpression of miR-۴۵۱a in decreased CERK gene expression in breast cancer using bioinformatics analysis

• Microarray meta-analysis focused on transcription factors involve in breast cancer cell response to soy isoflavones

• Gene ontology to explore functions of DEGs detected in breast cancer cell response to soy isoflavones

• Weighted gene coexpression network analysis of DEGs detected in breast cancer cell response to soy isoflavones

• Integrated systems biology investigation (in-silico) of the hub regulatory RNA interactions (competitive endogenous RNA) in the lung cancer microarray samples

• Integrative gene expression analysis of peripheral blood from autism spectrum disorder cases

• Cross talk between cancer immunity cycle and EMT; new light for study cancer progression

• Comprehensive RNA-Seq Meta-analysis identifies genes/pathways related to fat-tail development of sheep

• Identification of oxidative stress responsive hub genes and their related miRNAs in Arabidopsis thaliana based on integrated bioinformatics meta-analysis

• Identification of novel genes in different regions of brains: Meta-analysis of schizophrenia transcriptome data

• Associated Gene Expression Profiles in Pathogenesis of Lung Adenocarcinoma

• Genome-wide profiling of DNA/RNA hybrids (R-loops) in psoriasis disease

• Computational prediction of MicroRNA-Cancer relations

• Investigation of the interaction between bta-miR۲۴۱۰ and PTEN gene in dairy cattle production

• Detection and evaluation of protein complexes affecting on the skeletal muscle of beef cattle

• Investigating the differential expression of starch and transcription factor encoding genes and their relations in wheat cultivars with different bread quality at ۵ days post anthesis

• Studying the relation between differential expressed starch genes and bread quality in two wheat cultivars from ۵ to ۲۸ days post anthesis

• correlation between BP۱ and SPL۱ and protein phosphorylation in spms(multiple sclerosis)

• New insights into the fusarium wilt resistance in chickpea using genomics and transcriptomics meta-analysis

• Investigation of phylogenetic relationship of some isolates of Magnaporthe oryzae in different hosts

• Bioinformatics analysis of regulatory miRNAs and target lncRNAs in cervical cancer

• Evaluation of genetic mutation PLA۲G۶ gene in Parkinson’s disease by WES method with using bioinformatics analysis

• Bioinformatics analysis of changes FNDC۵ gene expression in skeletal muscle of whey protein-treated mice

• Bioinformatics evolution of an lncRNA signaling pathway and its related function in colorectal cancer

• Distribution of HLA alleles in malignant tissues of patients with hepatocellular carcinoma

• Whole genome analysis of fungal plant pathogens to find pathogenicity genes

• The importance of DNA sequencing on taxonomy of the genus Cladosporium

• Demonstration of cellular dynamic behavior in response to DNA damage through gene regulatory network analysis of single-cell resolution DNA repair phenotype and geneexpression multi-omics dataset

• the relation between aging process and contributor factors

• Bioinformatics study of level expression of miR-۲۱۲ as a biomarker of Glioblastoma

• Bioinformatics and phylogeny analysis on phytoanticipine tomatinase

• Investigation of IL-۱۷RA editing sites in patients with severe COVID-۱۹

• Identification of key transcription factors and microRNAs associated with drought stress in rice: a systems biology approach

• A Fully Automatic Registration and Analysis Platform for Next Generation Sequencing Data

• EDC-Protein network formation analysis in genetic response of human epithelial cells to SteA

• Investigation of the gene expression profile of podocytopathy in glomerulonephritis

• Bioinformatics study of miR-۳۰۱a as a blood-borne biomarker for detection of breast cancer

• Bioinformatic tools for microRNA dissection and identify thier target genes in sugarcane

• Genome analysis of Cardamine hirsuta using whole genome sequensing approach

• Progressively Multiple Protein Sequences Alignment Using Intuitionistic Fuzzy Approach

• Identification of effective miRNAs in breast cancer by bioinformatics analysis

• The importance of protein sequence control through Bioinformatics tools to achieve a large amount of desirable proteins in protein purification projects

• Hsa-miR-۲۴ is a novel and critical regulatory biomarker of LBL by regulation of cell growth signaling pathway: integrated microarray and bioinformatics analyses

• Phylogenetic analysis of the human gut microbiota and pathogenic bacteria using ۱۶S rRNA

• Molecular detection of Rickettsia spp. on ovine ticks collected northwest Iran: First report of Rickettsia sibirica

• Evaluation of ZmNAC۱۰ gene sequence and protein structure of this gene to evaluate salinity stress resistance in plants

• Phylogenetic analysis of some isolates of Fusarium spp.

• Analysis of targeted base ITS sequences in the genus Astragalus using Hill Climbing Algorithm

• Studying relationships of subfamily Panicoideae (Poaceae) in Iran with Bayesian and Maximum Parsmony approaches using ITS and MATK sequences

• In silico analysis of the deduced protein sequence of eugenol o-methyltransferase of Ocimum basilicum L.

• Bioinformatics analysis of the key enzyme of important volatile phenylpropanoid pathway in Ocimum basilicum

• Identification of Potential key Genes and Pathways in Prostate Cancer Using Bioinformatic Analysis

• Transcriptomic analysis of walnut/ Ophiognomonia leptostyla interaction using RNA-seq

• A reference transcriptome for walnut anthracnose pathogen, Ophiognomonia leptostyla

• Tandem repeats ubiquitously flank and contribute to translation initiation sites

• Identification of genes with significant differential expression in breast cancer patients using transcriptome data analysis

• Towards accurate avian tree of life

• Bioinformatics analysis of hsa-miR-۱۳۵a on APC gene in patients with Familial Adenomatous Polyposis

• Investigation of CFTR: c.۳۶۴T>A (p.Tyr۱۲۲Asn) variant using in silico predictive tools

• In silico assessment of CFTR: c.۱۱۱۸A>G (p.Asp۳۷۳Gly), a novel variant detected among Iranian population

• In silico pathogenicity evaluation of QDPR: c.۱۳۵T>A (p.Asn۴۵Lys) variant

• Integrated Bioinformatics Analysis of Genes Associated with Lung Cancer Pathway

• In silico detection of a new deleterious single nucleotide polymorphism and miRNA related to CHEK۲ gene in breast cancer and their interactions

• New insights into the evolutionary history of Bromus pumilio and Bromus gracillimus based on nuclear and plastome molecular data

• Investigation of renal tubular cells gene expression during acute kidney injury induced by Cisplatin

• Integrative analysis of protein-coding genes, long non-coding genes, and microRNAs in breast cancer by GDC RNATOOLS and drug-gene interaction analysis

• Bioinformatics Evaluation of the KRT Gene’s Effects on Epidermolysis Bullosa Disease

• Agonist/ antagonist compounds’ mechanism of action on estrogen receptor-positive breast cancer: a system-level investigation assisted by meta-analysis

• The gene expression patterns of stromal cells in prostate tissue during prostate cancer

• Bioinformatics analysis of profilin genes (PRF) in brachypodium

• A computationally optimized broadly reactive antigen analysis of tick midgut surface protein Bm۸۶ in vaccine development against Rhipicephalus microplus and Rhipicephalus annulatus

• Diabetes type ۲ and pancreatic cancer share biomarkers

• Selection of blood biomarkers to diagnose therapeutic resistance in people with epilepsy

• Investigation of competing endogenous RNA regulation of BCAS۴ and SHISA۷ in tau pathology in Alzheimer’s disease

• Improving the prediction of physical protein interaction by Balanced Random Forest interprotein residue contact predictions using sequence covariation information

• Comprehensive RNA, protein interaction and SNP analysis of CAX۱ in the Arabidopsis thaliana: integrated systems biology approach

• Liver tissue transcriptome data analysis for identification of key miRNAs in sheep (Ovis aries) with different dites

• An immunoinformatics approach for the design of a multi-epitope vaccine targeting lukD of Staphylococcus aureus

• effective factor to change spermatogenesis in multiple sclerosis

• Genome-wide identification and characterization of the metal tolerance protein (MTP) genefamily in Eucalyptus grandis

• Identification and characterization of raffinose biosynthesis pathway genes in Vitis vinifera

• The Effect of a Single Nucleotide Polymorphism on a miRNA Function in the Papillary Thyroid Carcinoma (PTC)

• How to used Bioinformatics Tools to Disease Variant Detection?

• Differences between hg-۱۹ and hg-۳۸ in transcriptomic analysis of cumulus cells in PCOS patient

• Bioinformatics analysis of gene expression profiling for identification of key proteins associated with non_alcoholic fatty liver disease

• Bioinformatics Study on Slc۳۴a۲ Gene in Lung Cancer Tumorigenesis

• Comparative genomics of prokaryotes

• Toward elucidation of shoot-root communications involved in the developmental transition of C۳ to C۴ photosynthesis by comparative transcriptome analysis of hypocotyls in Halimocnemis mollissima

• Molecular docking and ADMET study of bioactive compounds of Salvia officinalis against main protease of SARS-CoV۲

• Hologram quantitative structure-activity relationship (HQSAR) study for anticancer activities of ۲H-chromen-۲-one derivatives

• Comparison of the binding curcumin and Imatinib to some oncogenic tyrosine kinases

• ۱۴-۳-۳ sigma: new peptidic inhibitors by fragment-based drug design

• Microarray analysis for Glioblastoma drug-repositioning

• Bioinformatic screening of Lamiaceae family compounds as potential inhibitors of spikemediated receptor-binding of SARS-CoV-۲

• Evaluation of native plants of Hamedan province through their potential ability to treat colorectal cancer at the molecular level by systems biology, drug design and experimental methods

• Computational design of peptide inhibitors targeting the interaction of ACE۲ and the spike receptor-binding domain of the SARS-CoV-۲ Omicron variant

• Ligand Discovery for the human monocarboxylate transporter ۱ (MCT۱) in an openoutward conformation by virtual screening on ZINC’s FDA-approved drugs

• Application of activity cliffs to virtual screening for identify lactate dehydrogenase inhibitors using machine learning approaches

• Repurposing of Latanoprost as an ADAM۱۷ inhibitor: A ligand- and structure-based approach

• Design, and molecular docking studies of novel benzosuberone derivatives as potential anticancer agents

• Computational Design of a Candidate Vaccine to Increase Immune Responses against Omicron SARS-CoV-۲ variant

• In silico Design of a Candidate Vaccine to Hasten Immune Responses against Group B Streptococcus Bacteria

• Quantitative analysis for identifying important disease-related microRNAs

• SARS-CoV-۲ spike protein targeting by Saffron extracts: in silico molecular docking

• Immunoinformatics approach for designing poly-epitope based vaccines

• Designing a Bioinformatics Model to Select Antimicrobial Peptides against Helicobacter pylori Infection

• Target prediction for the AKT inhibitors in the inflammatory pathway of colorectal cancer using similarity-based methods from Chembl۲۵ database

• Target prediction for GSK۳β inhibitors in colorectal cancer pathway based on Morgan fingerprints

• Meta-Analysis of the Microarray Expression Data and Molecular Docking of the Secondary Metabolites of the Medicinal Plants (licorice, Echinacea Angustifolia, Ginseng, ) to Determine Their Active Ingredients Against SARS-CoV-۲

• Interaction effect of Pennyroyal essential oil compounds on Streptococcus pyogenes tyrosine phosphatase enzyme by molecular docking

• Molecular docking of sixteen common phenolic compounds of medicinal plants in inhibition of Streptococcus pyogenes tyrosine phosphatase

• IN-SILICO STUDY OF HERBAL COMPOUNDS AS NOVEL MAO-B INHIBITOR FOR PARKINSON’S DISEASE TREATMENT

• Structure-based virtual screening of FDA-approved compounds to find potential inhibitors for human monocarboxylate transporter ۱ in an open-inward conformation

• Investigating the protection effects of pharmaceutical polysaccharides on Interferon beta-۱a against heat stress: A molecular dynamic simulation

• Spike/ membrane multi-epitope based protein as a future candidate vaccine against sars-cov-۲

• Identification of effective natural compounds for reducing α-Synuclein aggregation involved in Parkinson’s disease using Molecular docking on the ZINC database

• Applying virtual screening approach to find out effective agonist against RXR (retinoid X receptor) as promising candidates to treat Alzheimer disease

• The development of natural dietary supplements and medicines utilizing bioinformatics as a tool to identify the biosynthesis processes of bioactive compounds of edible and medicinal mushrooms

• Bioinformatic Selection and Evaluation of Novel Drug Candidates to Inhibit Notch Signaling Pathway Based on Drug Repositioning Approach

• Molecular docking and spectroscopic studies of sulfonamide-based imines with human serum albumin

• Synthesis, Enzymatic Assay and Molecular Docking Studies of Biuret Derivatives for Discovery of New Urease Inhibitors as Potential Agents Against Helicobacter Pylori Infection

• Discovery of new natural inhibitors for aldosterone synthase (CYP۱۱B۲) for treating cardiovascular disease

• Discovery of new natural inhibitors for Human epidermal growth factor receptor-۲ (HER۲) for treating Breast cancer disease

• Novel QSAR Model for Cyclic Sulfonamide Derivatives as Potent COVID-۱۹ Inhibitors

• Pharmacoinformatics Study and High-Throughput Virtual Screening to Discover Effective Natural Compounds in Treatment of Erectile Dysfunction

• An In Silico Approach Towards Identification of Novel Chalcone Derivatives as Potential Monoamine Oxidases Inhibitors

• Antiviral effect assessment of some venom gland peptides from Iranian yellow scorpion, “Odontobuthus doriae” against SARS-CoV-۲ with the aim of drug development

• Molecular docking of HMG-CoA reductase and inhibitory effect of new derivatives of atorvastatin on this enzyme

• Bioinformatics analysis of Epitope-based candidate vaccine against the novel (SARS-CoV-۲)

• Drug-Target Interaction Prediction with Deep Learning and Recommender Systems

• The new inhibition strategy of the p۳۸ MAP Kinase protein by using mutagenesis and COXH۱۱ inhibitor

• Design of Potential Aminopeptidase N (APN) inhibitors via Pharmacophore and Docking-Based Virtual Screening

• Synthesis and spectroscopic characterization of carboxamide ligands: anti-cancer potential validation by in vitro interaction studies with HSA, DFT, molecular docking

• Spectroscopic and Molecular Docking Studies of Co(III) Carboxamide Complexes with HAS

• Reverse vaccinology approach to design a novel multi-epitope vaccine candidate against SARS-CoV-۲ Omicron variant

• Synthesis and in silico docking studies of curcumin-polyhydroxy derivatives as novel dual inhibitors of α-amylase and α-glucosidase

• Discovery of novel small molecular ligands for TLR۸ by computational methods

• Molecular docking studies of novel drug derivative bound to main protease enzyme (Mpro) in Covid-۱۹

• Looking for a AKT inhibitor; From similarity search to molecular docking

• Virtual Screening of EGFR Inhibitors for Cancer Treatment

• In Silico Design of a novel peptide inhibitor derivative of azurin peptide affecting gastric cancer

• Modeling anticancer drugs on the pathway JAK-STAT in cancer stem cells

• The new approach based on MD studies to design novel anticancer drugs based on amino acids and carbohydrates to inhibit DHFR

• Investigation and molecular dynamic study of polymeric encapsulation of anticancer drug doxorubicin as drug delivery systems

• In-Silico Study of Fibroblast Activation Protein Binding of Recent FDA Approved Inhibitors

• In-Vitro and In-Silico Study of Naphtalene-Based Schiff-Bases; Synthesis, Charactrization, HSA Binding, and MTT Assay

• Identification of a novel human dihydrofolate reductase inhibitor by virtual screening, docking, ADMET prediction and molecular dynamics simulations

• Carotenoids as potential inhibitors of TNFα in COVID-۱۹ treatment

• Experimental and Computational Studies of ND-Drived Schiff base ligands with HSA; Molecular Dynamics Simulation, QSAR Modeling and Molecular Docking Studies

• Structure based pharmacophore modeling, virtual screening and molecular docking approaches for identification of natural anti-cancer metastasis agents targeting Wnt/β- catenin pathway

• Investigation of some natural extract compounds against COVID-۱۹ by Molecular Docking study

• Exploring the interactions between artemisinin with serum paraoxonase -۱ using molecular docking technique

• ۲D QSAR model development for nitroimidazoles radiosensitizers DNA binding activity based on ۲D and ۳D descriptors

• Theoretical study of the inhibitory effect of bee venom peptides on coronavirus spike protein

• Investigation of Novel Regulators of the COPD Development Based on Systems Biology Approaches: A WGCNA Study

• Molecular docking and molecular dynamic simulation of Curcumin on three pre-apoptotic factors of Bad, Bak, and Bim

• Generalized dissimilarity models as a tool to predict Odonata assemblages species composition

• Comparison of the Salmonella enterica subsp. LT۲ metabolic model in biochemical databases

• A New Analytical Model Based on Cellular Automata to Study the Influence of Various Drugs on Alzheimer’s disease Progress

• Computational prediction of microRNAs’ target genes in rat brain involved in morphine addiction

• Extraction of temperature distribution of high intensity focused ultrasound: Nonlinear propagation

• The potential of antimicrobial peptides as Covid-۱۹ therapeutics using computational methods

• The effect of Phenol Hydroxylase enzyme on some phenolic compounds by molecular docking and simulation study

• Presentation of a mathematical model for describing and predicting the release of methotrexate and sodium valproate from polymer nanogels using finite difference method

• Structural Variation Detection from Paired-end NGS data using Hidden Markov Model

• Comparative molecular dynamics study of receptor-binding domains in wild type and Omicron (B.۱.۱.۵۲۹) variant of SARS-CoV-۲

• Molecular docking and molecular dynamic simulation of the effect of Pseudomonas phenol hydroxylase enzyme on polycyclic aromatic hydrocarbons (PAHs)

• Reaction-diffusion modeling suggests a novel amplification mechanism for the extremely-low frequency magnetic field bioeffects

• A Computational Approach to Modeling a Thermophilic Psychrophilic Protease Fusion Protein for Laundry Detergent

• Harnessing Bioinformatic Approaches to Designing a Multi-epitope Peptide Vaccine Against COVID-۱۹

• Investigation of SDCCAG۸ gene in COLON ADENOCARCINOMA and the possibility of rs۷۶۹۶۹۸۲۲۹ in hsa-mir-۴۵۰b-۵p

• Co-Expression Analysis for Identification of Critical Genes in Pancreatic Cancer

• Identification of Key long noncoding RNAs-related to Pancreatic Cancer Using Network Analysis

• In silico design of a multi-epitope vaccine candidate against SARS-CoV-۲

• Computational saturation mutagenesis to predict the effects of systematic mutations on the stability and binding affinity of nonstructural proteins ۷ and ۸ in SARS-CoV-۲

• A new mechanism in potassium channel blockage identified for a scorpion venom peptide

• Polymorphisms effects on structure and function of OeACP۲ and OeACP۳ proteins

• The Binding Assessment with Human Serum Albumin of Binuclear Ni(II) and Cu(II) Complexes Containing Bidentate ۸-Hydroxyquinoline Ligand

• Identifying Thermostability Characteristics of Family A DNA Polymerases

• Bioinformatics Analysis of the Expression of Key Genes Involved in Biosynthesis Pathway of Carvacrol of White Savory Essential Oil Under Drought Stress

• Investigating the effects of carboxyl terminal elimination from ۶۰۴ retinal isoform of IMPDH۱: an experimental and molecular dynamics simulation approach

• Protein Engineering of Bacillus α-Amylase to Improve Thermostability and Low Water Activity: A bioinformatics approach

• Diagnosis of breast cancer using K-Means and fuzzy C-Means clustering

• Binder design for targeting SARS-CoV-۲ spike protein: An in silico perspective

• Engineering carbonic anhydrase with improved solubility for green CO۲ capture

• P۲۳ protein is a candidate for vaccination against Cryptosporidiosis

• Molecular docking study on the LMNA variant (R۴۲۷C) effect in hypertrophic cardiomyopathy patient

• Protein structure assessment using knowledge-based statistical potential function based on Ramachandran plots

• Bioinformatics Evaluation of gene and microRNA through HER۲-positive breast cancer

• Expression Analysis of the Key Genes Involved in Biosynthesis Pathway of Major Component of Ziziphora persica Bunge Essential Oil under Drought Stress

• The investigation of horse myostatin with human follistatin by molecular docking method

• Identification of potential diagnostic microRNAs and lncRNAs in breast carcinoma: Integrated high-throughput bioinformatics investigation

• Rs۷۸۲۹۳۹۹۸ promotes the hepatocellular carcinoma by disturbing the folding and interaction of CDKN۳ protein: integrated gene expression and proteomics analyses

• Function of lectins in the efficiency of ferritin nanoparticle vaccines

• Investigation of the mechanism of phenol inhibitory activity in the function of fructosyl peptide oxidase

• Homology modeling of FimH protein of Klebsiella pneumoniae :a key protein in bacterial pathogenesis

• Bioinformatics analysis of gene expression profiling for identification of key proteins associated with Hepatocellular Carcinoma

• Evaluation of site-directed mutagenesis on stability and affinity of Bevacizumab antibody

• Genetic Analysis of ۴۰ MLPA-Negative Duchenne Muscular Dystrophy Patients by Whole-Exome Sequencing

• In Silico Identification of key microRNAs in Cannabis sativa L.

• α-Glucosidase Un-Competitive Inhibition investigation via Residual Interaction Network, and Free Energy Landscapes: ۰.۵ μs Molecular Dynamics Simulations

• Molecular docking of Enterocin-P peptide with DNA: an in silico study

• Bioinformatics evaluation of hsa-miR-۴۴۹۶ related to a single nucleotide polymorphism (rs۱۰۳۱۳۰۵۳۳۰) of GSTP۱ gene in gastric cancer

• Relative expression analysis of COL۱A۱ mRNA in oral tongue squamous cell carcinoma: a study based on gene expression omnibus (GEO) and bioinformatics analysis

• Genome-Wide Identification of Conserved MiRNAs in Andrographis paniculate Nees

• Protein Structure Preidction of Glutamate receptor ۳

• Molecular Docking Studies of Vitamin K Epoxide Reductase Subunit۱

• The Role of CD۸۱ Gene in the Expression of Tumor-Suppressive miR-let-۷ in HCV-Infected Patients with Hepatocellular Carcinoma

• A multi-epitope vaccine design to target SARS-CoV-۲ employing an in silico approach

• Integrated Bioinformatics Analysis of Hub Genes and Pathways in Thyroid Cancer

• Integrated Bioinformatics Analysis of Key Genes in Hepatitis B Virus-Associated Hepatocellular Carcinoma

• Investigation of structural properties of lunasin with computational tools

• The rational design of stabilizing mutation in IMPDH۱ by molecular dynamics simulations: a structural study

• In silico Molecular dynamics of lead nitrate interaction with replication compounds of E.coli

• Bioinformatics approach for potential inhibitory of pyrogallol in ovarian cancer by Cdc۲۵A targeting

• Evaluation of BRCA۱ transcription in Glioblastoma Disease through Bioinformatics analysis

• Comparison of spatial distribution patterns of SNPs throughout the evolution

• Bioinformatic analysis on regulation of GGH gene in paranoid schizophrenia patients

• Molecular docking study of the quenching mechanisms of luminol through interaction with ssDNA aptamer

• Design, In silico analysis, expression and evaluation of hybrid and bivalent forms of scFvs against Neisseria meningitides factor H binding protein (fHbp)

• Gold Nanoparticles as Efficient Scaffolds for Aptamer Adsorption: An In-silico Study

• Molecular Insight into the Adsorption of Tobramycin Specific Aptamer on Graphene Sheet

• Identification of key genes and signaling pathways in comparative transcriptome analysis of bovine mammary epithelial cells challenged with Escherichia coli

• RNAseq analysis of Bovine infected with Mycobacterium avium subsp. Paratuberculosis in three time point

• Bioinformatics Evaluation of Interactions amonge Gene, microRNA, and Potential Drugs through HER۲-Positive Breast Cancer

• Bioinformatics analysis of gene expression profiles to identify key genes associated with Nonsmall cell lung cancer (NSCLC)

• Homotopy analysis of homeostatic mechanisms in a feedforward network

• hsa-miR-۸۰۸۱ is a novel key regulatory RNA in the thyroid cancer development by regulation of HMGA۲ in the transcriptional misregulation in cancer signaling pathway:high-throughput data analysis of microarray experiment

• Integrative gene network analysis of rice transcriptome to identification of key microRNAs involved in salinity stress

• Interconnectedness of Metastasis and Invasion at single-cell resolution

• A systems biology approach shows that RUNX۱ can be considered as a potential target to inhibit glioblastoma progression

• Dysregulation of LINC۰۱۹۸۵ lncRNA leads to the abnormal exocytosis by low expression of MMRN۱ in the thyroid cancer patients: an integrated computational biology approach

• SERPINB۲ Overexpression As a Potential Contributor to Development of Multiple Myeloma And Its Predictive CeRNA Network

• Analysis of floral development related gene co-expression networks in Arabidopsis thaliana

• The importance of circular RNAs in hepatocellular carcinoma based on molecular pathways analysis of their microRNA sponges

• A Meta-Analysis of Comparative Transcriptomic Data Reveals a Set of Genes Involved in the lignin synthesis in Nicotiana tabacum

• Bioinformatics-Based Prediction of Recurrence in Tamoxifen-Treated Patients with Estrogen Receptor-Positive Breast Cancer

• In silico systems biology approach for analyzing of Genetic network and pathways in major depressive disorder

• Bioinformatics investigation of human genes expression to bacterial meningitis pathogenesis

• Deep neural network prediction of interplay between lncRNAs and salinity response in rice

• In-silico analysis of a missense SNP (rs۱۸۰۵۳۲۳ C>T) in human PMS۲ gene

• Finding the cross-tissue biomarkers gastric cancer diagnosis by transcriptome high throughput data analysis

• The Role of Tumor Microenvironment Communication in Cancer Progression Using Single-Cell RNA Sequencing: A System Level Study

• Integrating bioprocessing engineering and metagenomics approach to optimize fast production of enriched biocomppost and humic acid from rice straw